5J87 Transferase Transferase Inhibitor date Apr 07, 2016
title Discovery Of N-(3-(5-((3-Acrylamido-4-(Morpholine-4-Carbonyl Amino)-1-Methyl-6-Oxo-1,6-Dihydropyridin-3-Yl)-2-Methylphen (Tert-Butyl)Benzamide (Chmfl-Btk-01) As A Highly Selective Irreversible Btk Kinase Inhibitor
authors C.H.Yun, S.Zhang
compound source
Molecule: Tyrosine-Protein Kinase Btk
Chain: A, B, C, D
Fragment: Unp Residues 385-658
Synonym: Agammaglobulinemia Tyrosine Kinase,Atk,B-Cell Prog Kinase,Bpk,Bruton Tyrosine Kinase;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btk, Agmx1, Atk, Bpk
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.761 93.550 145.889 90.00 89.94 90.00
method X-Ray Diffractionresolution 1.59 Å
ligand N42 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDiscovery of N-(3-(5-((3-acrylamido-4-(morpholine-4-carbonyl)phenyl)amino)-1-methyl-6-oxo-1,6- dihydropyridin-3-yl)-2-methylphenyl)-4-(tert-butyl)benzamide (CHMFL-BTK-01) as a highly selective irreversible Bruton's tyrosine kinase (BTK) inhibitor., Liang Q, Chen Y, Yu K, Chen C, Zhang S, Wang A, Wang W, Wu H, Liu X, Wang B, Wang L, Hu Z, Wang W, Ren T, Zhang S, Liu Q, Yun CH, Liu J, Eur J Med Chem. 2017 May 5;131:107-125. doi: 10.1016/j.ejmech.2017.03.001. Epub, 2017 Mar 2. PMID:28315597
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]
  • Biological Unit Coordinates (5j87.pdb1.gz) 195 Kb
  • LPC: Ligand-Protein Contacts for 5J87
  • CSU: Contacts of Structural Units for 5J87
  • Structure Factors (1675 Kb)
  • Retrieve 5J87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J87 from S2C, [Save to disk]
  • Re-refined 5j87 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J87
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j87_D] [5j87_A] [5j87] [5j87_B] [5j87_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J87
  • Community annotation for 5J87 at PDBWiki (http://pdbwiki.org)

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