5JGX Hydrolase date Apr 20, 2016
title Spin-Labeled T4 Lysozyme Construct V131v1
authors A.R.Balo, H.Feyrer, O.P.Ernst
compound source
Molecule: Endolysin
Chain: A
Synonym: Lysis Protein, Lysozyme, Muramidase
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
 Organism_scientific: Enterobacteria Phage T4 Sensu Lato
Organism_taxid: 348604
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 32 2 1
R_factor 0.160 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.103 60.103 96.551 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.53 Å
ligand CL, K, PO4, V1A enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceToward Precise Interpretation of DEER-Based Distance Distributions: Insights from Structural Characterization of V1 Spin-Labeled Side Chains., Balo AR, Feyrer H, Ernst OP, Biochemistry. 2016 Sep 20;55(37):5256-63. doi: 10.1021/acs.biochem.6b00608. Epub , 2016 Sep 2. PMID:27532325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (5jgx.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 5JGX
  • CSU: Contacts of Structural Units for 5JGX
  • Structure Factors (640 Kb)
  • Retrieve 5JGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JGX from S2C, [Save to disk]
  • Re-refined 5jgx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JGX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jgx] [5jgx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JGX
  • Community annotation for 5JGX at PDBWiki (http://pdbwiki.org)

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