5JKG Transferase Transferase Inhibitor date Apr 26, 2016
title The Crystal Structure Of Fgfr4 Kinase Domain In Complex With
authors D.Wu, L.Chen, Y.Chen
compound source
Molecule: Fibroblast Growth Factor Receptor 4
Chain: A
Fragment: Protein Kinase Domain, Unp Residues 445-753
Synonym: Fgfr-4
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgfr4, Jtk2, Tkf
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21 Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 43 21 2
R_factor 0.233 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.887 61.887 186.059 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 6LF enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (5jkg.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 5JKG
  • CSU: Contacts of Structural Units for 5JKG
  • Structure Factors (324 Kb)
  • Retrieve 5JKG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JKG from S2C, [Save to disk]
  • Re-refined 5jkg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JKG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jkg_A] [5jkg]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JKG: [TyrKc ] by SMART
  • Other resources with information on 5JKG
  • Community annotation for 5JKG at PDBWiki (http://pdbwiki.org)

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