5JSE Viral Protein date May 08, 2016
title Crystal Structure Of Phiab6 Tailspike In Complex With Three- Oligosaccharides Of Acinetobacter Baumannii Surface Polysac
authors I.M.Lee, I.F.Tu, K.F.Huang, S.H.Wu
compound source
Molecule: Phiab6 Tailspike
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Unidentified Phage
Organism_taxid: 38018
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.131 R_Free 0.165
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.519 78.139 248.405 90.00 100.47 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand 1GN, 6PZ, ACY, BGC, GAL, MLA enzyme
Primary referenceStructural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage PhiAB6 tailspike protein., Lee IM, Tu IF, Yang FL, Ko TP, Liao JH, Lin NT, Wu CY, Ren CT, Wang AH, Chang CM, Huang KF, Wu SH, Sci Rep. 2017 Feb 17;7:42711. doi: 10.1038/srep42711. PMID:28209973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (591 Kb) [Save to disk]
  • Biological Unit Coordinates (5jse.pdb1.gz) 582 Kb
  • LPC: Ligand-Protein Contacts for 5JSE
  • CSU: Contacts of Structural Units for 5JSE
  • Structure Factors (4326 Kb)
  • Retrieve 5JSE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JSE from S2C, [Save to disk]
  • Re-refined 5jse structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JSE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JSE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jse_C] [5jse_A] [5jse_B] [5jse]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JSE
  • Community annotation for 5JSE at PDBWiki (http://pdbwiki.org)

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