5JUZ Transferase Transferase Inhibitor date May 10, 2016
title Crystal Structure Of Human Fpps In Complex With An Allosteri Inhibitor Cl-06-057
authors J.Park, A.Magder, C.Y.Leung, Y.S.Tsantrizos, A.M.Berghuis
compound source
Molecule: Farnesyl Pyrophosphate Synthase
Chain: F
Fragment: Unp Residues 67-419
Synonym: Fps,(2e,6e)-Farnesyl Diphosphate Synthase, Dimethylallyltranstransferase,Farnesyl Diphosphate Synthase Geranyltranstransferase;
Ec: 2.5.1.10,2.5.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fdps, Fps, Kiaa1293
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.181 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.900 110.900 77.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand CL, YL4 enzyme Transferase E.C.2.5.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referencePharmacophore Mapping of Thienopyrimidine-Based Monophosphonate (ThP-MP) Inhibitors of the Human Farnesyl Pyrophosphate Synthase., Park J, Leung CY, Matralis AN, Lacbay CM, Tsakos M, Fernandez De Troconiz G, Berghuis AM, Tsantrizos YS, J Med Chem. 2017 Mar 9;60(5):2119-2134. doi: 10.1021/acs.jmedchem.6b01888. Epub, 2017 Feb 28. PMID:28208018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (5juz.pdb1.gz) 223 Kb
  • LPC: Ligand-Protein Contacts for 5JUZ
  • CSU: Contacts of Structural Units for 5JUZ
  • Structure Factors (412 Kb)
  • Retrieve 5JUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JUZ from S2C, [Save to disk]
  • Re-refined 5juz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JUZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5juz_F] [5juz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JUZ
  • Community annotation for 5JUZ at PDBWiki (http://pdbwiki.org)

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