5JVU Motor Protein date May 11, 2016
title The Neck-Linker And Alpha 7 Helix Of Drosophila Melanogaster Fused To Eb1
authors R.K.Phillips, I.Rayment
compound source
Molecule: Chimera Protein Of Kinesin Heavy Chain And Microt Associated Protein Rpeb Family Member 1;
Chain: A, B
Fragment: Unp P17210 Residues 334-365,Unp Q15691 Residues 2
Synonym: Apc-Binding Protein Eb1,End-Binding Protein 1,Eb1
Engineered: Yes
Organism_scientific: Drosophila Melanogaster, Homo Sapiens
Organism_common: Fruit Fly, Human
Organism_taxid: 7227, 9606
Gene: Khc, Kin, Cg7765, Mapre1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.198 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.973 37.783 52.706 90.00 114.96 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFamily-specific kinesin structures reveal neck-linker length based on initiation of the coiled-coil., Phillips RK, Peter LG, Gilbert SP, Rayment I, J Biol Chem. 2016 Jul 26. pii: jbc.M116.737577. PMID:27462072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (5jvu.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 5JVU
  • CSU: Contacts of Structural Units for 5JVU
  • Structure Factors (101 Kb)
  • Retrieve 5JVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JVU from S2C, [Save to disk]
  • Re-refined 5jvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JVU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jvu_B] [5jvu_A] [5jvu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JVU
  • Community annotation for 5JVU at PDBWiki (http://pdbwiki.org)

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