5JW2 Dna Antibiotic date May 11, 2016
title Crystal Structure Of Mithramycin Analogue Mtm Sa-Phe In Comp 10-Mer Dna Agggatccct
authors C.Hou, J.Rohr, O.V.Tsodikov
compound source
Molecule: Dna (5'-D(Apgpgpgpaptpcpcpcpt)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 43 21 2
R_factor 0.279 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.380 49.380 128.295 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand 6O7, ZN enzyme
Primary referenceStructures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1., Hou C, Weidenbach S, Cano KE, Wang Z, Mitra P, Ivanov DN, Rohr J, Tsodikov OV, Nucleic Acids Res. 2016 Sep 1. pii: gkw761. PMID:27587584
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (5jw2.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 5JW2
  • CSU: Contacts of Structural Units for 5JW2
  • Structure Factors (67 Kb)
  • Retrieve 5JW2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JW2 from S2C, [Save to disk]
  • Re-refined 5jw2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JW2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JW2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jw2_B] [5jw2_A] [5jw2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JW2
  • Community annotation for 5JW2 at PDBWiki (http://pdbwiki.org)

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