5KGY Structure From Cyana 2.1 date Jun 13, 2016
title Phenol-Soluble Modulin Alpha 3
authors K.M.Towle, C.T.Lohans, J.Z.Acedo, M.J.Van Belkum, M.Miskolzie, J.
compound source
Molecule: Phenol-Soluble Modulin Alpha 3 Peptide
Chain: A
Engineered: Yes
Other_details: Peptide Contains N-Terminal Formyl Methionin
 Synthetic: Yes
Organism_scientific: Staphylococcus Aureus (Strain Bovine R Et3-1);
Organism_taxid: 273036
methodSolution NMR
ligand FME enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution Structures of Phenol-Soluble Modulins alpha1, alpha3, and beta2, Virulence Factors from Staphylococcus aureus., Towle KM, Lohans CT, Miskolzie M, Acedo JZ, van Belkum MJ, Vederas JC, Biochemistry. 2016 Aug 30;55(34):4798-806. doi: 10.1021/acs.biochem.6b00615. Epub, 2016 Aug 15. PMID:27525453
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (5kgy.pdb1.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 5KGY
  • CSU: Contacts of Structural Units for 5KGY
  • Original NMR restraints for 5KGY from PDB
  • Retrieve 5KGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KGY from S2C, [Save to disk]
    • View 5KGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kgy_A] [5kgy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KGY
  • Community annotation for 5KGY at PDBWiki (http://pdbwiki.org)

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