5KHB Signaling Protein date Jun 14, 2016
title Structure Of Phenol-Soluble Modulin Alpha1
authors K.M.Towle, C.T.Lohans, J.Z.Acedo, M.Miskolzie, M.J.Van Belkum, J.
compound source
Molecule: Psm Alpha1
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
methodSolution NMR
ligand FME enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution Structures of Phenol-Soluble Modulins alpha1, alpha3, and beta2, Virulence Factors from Staphylococcus aureus., Towle KM, Lohans CT, Miskolzie M, Acedo JZ, van Belkum MJ, Vederas JC, Biochemistry. 2016 Aug 30;55(34):4798-806. doi: 10.1021/acs.biochem.6b00615. Epub, 2016 Aug 15. PMID:27525453
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (5khb.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 5KHB
  • CSU: Contacts of Structural Units for 5KHB
  • Original NMR restraints for 5KHB from PDB
  • Retrieve 5KHB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KHB from S2C, [Save to disk]
  • View 5KHB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KHB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5khb_A] [5khb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KHB
  • Community annotation for 5KHB at PDBWiki (http://pdbwiki.org)

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