5KHI Transport Protein date Jun 14, 2016
title Hcn2 Cnbd In Complex With Purine Riboside-3', 5'-Cyclic Mono (Cpump)
authors L.C.T.Ng, I.Putrenko, V.Baronas, F.Van Petegem, E.A.Accili
compound source
Molecule: Potassiumsodium Hyperpolarization-Activated Cycl Nucleotide-Gated Channel 2;
Chain: A
Fragment: Unp Residues 443-643
Synonym: Brain Cyclic Nucleotide-Gated Channel 2,Bcng-2, Hyperpolarization-Activated Cation Channel 1,Hac-1;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Hcn2, Bcng2, Hac1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasimd
Expression_system_plasmid: Pet28
symmetry Space Group: P 4 21 2
R_factor 0.201 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.278 96.278 46.763 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 6SX, CSX enzyme
Primary referenceCyclic Purine and Pyrimidine Nucleotides Bind to the HCN2 Ion Channel and Variably Promote C-Terminal Domain Interactions and Opening., Ng LC, Putrenko I, Baronas V, Van Petegem F, Accili EA, Structure. 2016 Aug 23. pii: S0969-2126(16)30193-9. doi:, 10.1016/j.str.2016.06.024. PMID:27568927
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (5khi.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 5KHI
  • CSU: Contacts of Structural Units for 5KHI
  • Structure Factors (236 Kb)
  • Retrieve 5KHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KHI from S2C, [Save to disk]
  • Re-refined 5khi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KHI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5khi_A] [5khi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KHI: [cNMP ] by SMART
  • Other resources with information on 5KHI
  • Community annotation for 5KHI at PDBWiki (http://pdbwiki.org)

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