5KIB Dna date Jun 16, 2016
title Structural Impact Of Single Ribonucleotides In Dna
authors M.Evich, A.M.Spring-Connell, F.Storici, M.W.Germann
compound source
Molecule: Dnarna (5'-D(Tptpapg)-R(Pg)-D(Pcpcptpg)
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Cpapgpgpcpcptpapa)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
Primary referenceStructural impact of single ribonucleotides in DNA., Evich M, Spring-Connell AM, Storici F, Germann MW, Chembiochem. 2016 Aug 9. doi: 10.1002/cbic.201600385. PMID:27504600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (5kib.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 5KIB
  • Original NMR restraints for 5KIB from PDB
  • Retrieve 5KIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KIB from S2C, [Save to disk]
  • View 5KIB in 3D
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  • Visual 3D analysis of 5KIB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kib_B] [5kib_A] [5kib]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KIB
  • Community annotation for 5KIB at PDBWiki (http://pdbwiki.org)

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