5KJM	Transferase Transferase Inhibitor	date	Jun 20, 2016
title	Smyd2 In Complex With Az931
authors	A.Ferguson
compound		source
Molecule: N-Lysine Methyltransferase Smyd2 Chain: A Synonym: Hskm-B,Histone Methyltransferase Smyd2,Lysine N- Methyltransferase 3c,Set And Mynd Domain-Containing Protein Ec: 2.1.1.-,2.1.1.43 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Smyd2, Kmt3c Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 4	R_factor 0.176 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 156.033 156.033 52.735 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.19 Å
ligand	6TM, SAM, ZN	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A histone methyltransferase ac...
Primary reference	Design, Synthesis, and Biological Activity of Substrate Competitive SMYD2 Inhibitors., Cowen SD, Russell D, Dakin LA, Chen H, Larsen NA, Godin R, Throner S, Zheng X, Molina A, Wu J, Cheung T, Howard T, Garcia-Arenas R, Keen N, Pendleton CS, Pietenpol JA, Ferguson AD, J Med Chem. 2016 Dec 22;59(24):11079-11097. Epub 2016 Dec 1. PMID:28002961

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk] Biological Unit Coordinates (5kjm.pdb1.gz) 149 Kb LPC: Ligand-Protein Contacts for 5KJM CSU: Contacts of Structural Units for 5KJM Structure Factors (908 Kb) Retrieve 5KJM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KJM from S2C, [Save to disk] Re-refined 5kjm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KJM in 3D

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Visual 3D analysis of 5KJM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kjm] [5kjm_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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