5KLI Oxidoreductase date Jun 24, 2016
title Rhodobacter Sphaeroides Bc1 With Stigmatellin And Antimycin
authors D.Xia, L.Esser, F.Zhou, W.K.Tang, C.A.Yu
compound source
Molecule: Cytochrome B
Chain: A, E, K, O
Engineered: Yes
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Petb, Fbcb
Expression_system: Rhodobacter Sp.
Expression_system_taxid: 1062

Molecule: Cytochrome C1
Chain: B, F, L, P
Engineered: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Petc, Fbcc
Expression_system: Rhodobacter Sp.
Expression_system_taxid: 1062

Molecule: Ubiquinol-Cytochrome C Reductase Iron-Sulfur Subu
Chain: C, G, M, Q
Synonym: Rieske Iron-Sulfur Protein,Risp
Ec: 1.10.2.2
Engineered: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Peta, Fbcf
Expression_system: Rhodobacter Sp.
Expression_system_taxid: 1062
symmetry Space Group: P 1
R_factor 0.211 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.861 126.929 127.891 64.64 87.69 61.80
method X-Ray Diffractionresolution 3.00 Å
ligand ANJ, FES, HEC, HEM, LOP, SMA, SR enzyme Oxidoreductase E.C.1.10.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, O, K, E


F, P, B, L
  • electron transfer activity


  • Q, M, C, G
  • ubiquinol-cytochrome-c reduc...


  • Primary referenceHydrogen Bonding to the substrate is not required for Rieske iron-sulfur protein docking to the quinol oxidation site of complex III., Esser L, Zhou F, Zhou Y, Xiao Y, Tang WK, Yu CA, Qin Z, Xia D, J Biol Chem. 2016 Oct 7. pii: jbc.M116.744391. PMID:27758861
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1711 Kb) [Save to disk]
  • Biological Unit Coordinates (5kli.pdb1.gz) 846 Kb
  • Biological Unit Coordinates (5kli.pdb2.gz) 844 Kb
  • LPC: Ligand-Protein Contacts for 5KLI
  • CSU: Contacts of Structural Units for 5KLI
  • Structure Factors (1317 Kb)
  • Retrieve 5KLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KLI from S2C, [Save to disk]
  • Re-refined 5kli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KLI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kli_A] [5kli_F] [5kli_P] [5kli_L] [5kli_G] [5kli_C] [5kli_Q] [5kli_E] [5kli_O] [5kli_M] [5kli_K] [5kli_B] [5kli]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KLI
  • Community annotation for 5KLI at PDBWiki (http://pdbwiki.org)

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