5KTX Transferase date Jul 12, 2016
title Crebbp Bromodomain In Complex With Cpd59 ((S)-1-(3-((2-Fluor Methyl-1h-Pyrazol-4-Yl)Phenyl)Amino)-1-(Tetrahydrofuran-3-Y Dihydro-1h-Pyrazolo[4,3-C]Pyridin-5(4h)-Yl)Ethanone)
authors J.M.Murray, C.Noland
compound source
Molecule: Creb-Binding Protein
Chain: A
Fragment: Bromodomain (Unp Residues 1085-1196)
Ec: 2.3.1.48
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crebbp, Cbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.166 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.255 49.320 80.253 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.27 Å
ligand 6XH, DMS, EDO enzyme Transferase E.C.2.3.1.48 BRENDA
Primary referenceDiscovery of a Potent and Selective in Vivo Probe (GNE-272) for the Bromodomains of CBP/EP300., Crawford TD, Romero FA, Lai KW, Tsui V, Taylor AM, de Leon Boenig G, Noland CL, Murray J, Ly J, Choo EF, Hunsaker TL, Chan EW, Merchant M, Kharbanda S, Gascoigne KE, Kaufman S, Beresini MH, Liao J, Liu W, Chen KX, Chen Z, Conery AR, Cote A, Jayaram H, Jiang Y, Kiefer JR, Kleinheinz T, Li Y, Maher J, Pardo E, Poy F, Spillane KL, Wang F, Wang J, Wei X, Xu Z, Xu Z, Yen I, Zawadzke L, Zhu X, Bellon S, Cummings R, Cochran AG, Albrecht BK, Magnuson S, J Med Chem. 2016 Sep 28. PMID:27682507
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5ktx.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5KTX
  • CSU: Contacts of Structural Units for 5KTX
  • Structure Factors (763 Kb)
  • Retrieve 5KTX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KTX from S2C, [Save to disk]
  • Re-refined 5ktx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KTX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KTX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ktx_A] [5ktx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KTX: [BROMO ] by SMART
    • Other resources with information on 5KTX
  • Community annotation for 5KTX at PDBWiki (http://pdbwiki.org)

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