5KV6 Isomerase date Jul 13, 2016
title Human Cyclophilin A At 278k, Data Set 8
authors S.Russi, A.Gonzalez, L.R.Kenner, D.A.Keedy, J.S.Fraser, H.Van Den
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase A
Chain: A
Synonym: Ppiase A,Cyclophilin A,Cyclosporin A-Binding Prote Rotamase A;
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppia, Cypa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.958 52.606 89.198 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceConformational variation of proteins at room temperature is not dominated by radiation damage., Russi S, Gonzalez A, Kenner LR, Keedy DA, Fraser JS, van den Bedem H, J Synchrotron Radiat. 2017 Jan 1;24(Pt 1):73-82. doi: 10.1107/S1600577516017343. , Epub 2017 Jan 1. PMID:28009548
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5kv6.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 5KV6
  • Structure Factors (439 Kb)
  • Retrieve 5KV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KV6 from S2C, [Save to disk]
  • Re-refined 5kv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KV6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kv6] [5kv6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KV6
  • Community annotation for 5KV6 at PDBWiki (http://pdbwiki.org)

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