5KZ0 Transferase Transferase Inhibitor date Jul 22, 2016
title Structure Of Human Anaplastic Lymphoma Kinase In Complex Wit 1-{[2-Amino-5-(1,3-Dimethyl-1h-Pyrazol-4-Yl)Pyridin-3-Yl]Ox 4-Fluoro-N,N-Dimethylbenzamide
authors M.Mctigue, Y.L.Deng, W.Liu, A.Brooun
compound source
Molecule: Alk Tyrosine Kinase Receptor
Chain: A
Fragment: Unp Residues 1093-1411
Synonym: Anaplastic Lymphoma Kinase
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.740 57.070 104.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 6YL enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of (10R)-7-amino-12-fluoro-2,10,16-trimethyl-15-oxo-10,15,16,17-tetrahydro-2H-8,4-(m etheno)pyrazolo[4,3-h][2,5,11]benzoxadiazacyclotetradecine-3-carbonitrile (PF-06463922), a macrocyclic inhibitor of ALK/ROS1 with pre-clinical brain exposure and broad spectrum potency against ALK-resistant mutations., Johnson TW, Richardson PF, Bailey S, Brooun A, Burke BJ, Collins MR, Cui JJ, Deal JG, Deng YL, Dinh DM, Engstrom LD, He M, Hoffman JE, Hoffman RL, Huang Q, Kath J, Kania RS, Lam H, Lam JL, Le PT, Lingardo L, Liu W, McTigue MA, Palmer CL, Sach NW, Smeal T, Smith GL, Stewart AE, Timofeevski SL, Zhu H, Zhu J, Zou HY, Edwards MP, J Med Chem. 2014 May 13. PMID:24819116
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5kz0.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5KZ0
  • CSU: Contacts of Structural Units for 5KZ0
  • Structure Factors (122 Kb)
  • Retrieve 5KZ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KZ0 from S2C, [Save to disk]
  • Re-refined 5kz0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KZ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KZ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kz0] [5kz0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KZ0: [TyrKc ] by SMART
  • Other resources with information on 5KZ0
  • Community annotation for 5KZ0 at PDBWiki (http://pdbwiki.org)

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