5L0I Cell Adhesion date Jul 27, 2016
title Human Metavinculin Mvt R975w Cardiomyopathy-Associated Mutan (Residues 959-1134)
authors K.Chinthalapudi, T.Izard
compound source
Molecule: Vinculin
Chain: A
Fragment: Unp Residues 959-1134
Synonym: Metavinculin,Mv
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vcl
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: C 1 2 1
R_factor 0.195 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.074 41.519 44.148 90.00 96.14 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand GOL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDifferential lipid binding of vinculin isoforms promotes quasi-equivalent dimerization., Chinthalapudi K, Rangarajan ES, Brown DT, Izard T, Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9539-44. doi:, 10.1073/pnas.1600702113. Epub 2016 Aug 8. PMID:27503891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5l0i.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 5L0I
  • CSU: Contacts of Structural Units for 5L0I
  • Structure Factors (392 Kb)
  • Retrieve 5L0I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L0I from S2C, [Save to disk]
  • Re-refined 5l0i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5L0I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5L0I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l0i] [5l0i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5L0I
  • Community annotation for 5L0I at PDBWiki (http://pdbwiki.org)

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