5L9R	Oxidoreductase	date	Jun 10, 2016
title	Hif Prolyl Hydroxylase 2 (Phd2 Egln1) In Complex With N-Oxa (Nog)
authors	R.Chowdhury, C.J.Schofield
compound		source
Molecule: Egl Nine Homolog 1 Chain: A Fragment: Catalytic Domain, Residues 181-426 Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2,Hph- Hydroxylase Domain-Containing Protein 2,Phd2,Sm-20; Ec: 1.14.11.29 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egln1, C1orf12, Pnas-118, Pnas-137 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a(+)
symmetry	Space Group: P 41	R_factor 0.156 R_Free 0.188
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.233 71.233 48.245 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.81 Å
ligand	GOL, MN, OGA, PG4, SO4	enzyme	Oxidoreductase E.C.1.14.11.29 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases., Chowdhury R, Leung IK, Tian YM, Abboud MI, Ge W, Domene C, Cantrelle FX, Landrieu I, Hardy AP, Pugh CW, Ratcliffe PJ, Claridge TD, Schofield CJ, Nat Commun. 2016 Aug 26;7:12673. doi: 10.1038/ncomms12673. PMID:27561929

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (5l9r.pdb1.gz) 71 Kb LPC: Ligand-Protein Contacts for 5L9R CSU: Contacts of Structural Units for 5L9R Structure Factors (370 Kb) Retrieve 5L9R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5L9R from S2C, [Save to disk] Re-refined 5l9r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5L9R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5L9R

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5l9r_A] [5l9r] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5L9R: [P4Hc ] by SMART

Other resources with information on 5L9R

Community annotation for 5L9R at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---