5LAT	Oxidoreductase	date	Jun 15, 2016
title	Hif Prolyl Hydroxylase 2 (Phd2egln1) P317r Variant In Compl Mn(II) And N-[(1-Chloro-4-Hydroxyisoquinolin-3-Yl)Carbonyl] (Iox3un9)
authors	R.Chowdhury, C.J.Schofield
compound		source
Molecule: Egl Nine Homolog 1 Chain: A Fragment: Catalytic Domain, Unp Residues 181-426 Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2,Hph- Hydroxylase Domain-Containing Protein 2,Phd2,Sm-20; Ec: 1.14.11.29 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egln1, C1orf12, Pnas-118, Pnas-137 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_vector: Pet28a(+)
symmetry	Space Group: P 63	R_factor 0.150 R_Free 0.166
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.182 111.182 40.028 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BCT, GOL, MN, UN9	enzyme	Oxidoreductase E.C.1.14.11.29 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for oxygen degradation domain selectivity of the HIF prolyl hydroxylases., Chowdhury R, Leung IK, Tian YM, Abboud MI, Ge W, Domene C, Cantrelle FX, Landrieu I, Hardy AP, Pugh CW, Ratcliffe PJ, Claridge TD, Schofield CJ, Nat Commun. 2016 Aug 26;7:12673. doi: 10.1038/ncomms12673. PMID:27561929

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (5lat.pdb1.gz) 111 Kb LPC: Ligand-Protein Contacts for 5LAT CSU: Contacts of Structural Units for 5LAT Structure Factors (1446 Kb) Retrieve 5LAT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LAT from S2C, [Save to disk] Re-refined 5lat structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LAT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LAT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lat_A] [5lat] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5LAT: [P4Hc ] by SMART

Other resources with information on 5LAT

Community annotation for 5LAT at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---