5LCV	Viral Protein Immune System	date	Jun 22, 2016
title	Structural Basis Of Zika And Dengue Virus Potent Antibody Cr Neutralization
authors	G.Barba-Spaeth
compound		source
Molecule: Polyprotein Chain: A, B Engineered: Yes		Organism_scientific: Zika Virus Organism_common: Zikv Organism_taxid: 64320 Strain: Mr 766 Expression_system: Drosophila Melanogaster Expression_system_taxid: 7227 Expression_system_cell: Schneider 2 Expression_system_vector_type: Pmt-Bip-Strep Expression_system_plasmid: Pt389
Molecule: Broadly Neutralizing Human Antibody Ede2 A11 Chain: H Engineered: Yes Other_details: Fab Fragment, Heavy Chain		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Drosophila Melanogaster Expression_system_taxid: 7227 Expression_system_cell: Schneider 2
Molecule: Broadly Neutralizing Human Antibody Ede2 A11 Chain: L Engineered: Yes Other_details: Fab Fragment, Light Chain		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Drosophila Melanogaster Expression_system_taxid: 7227 Expression_system_cell: Schneider 2
symmetry	Space Group: C 2 2 21	R_factor 0.224 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 204.288 207.317 124.576 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.64 Å
ligand	BMA, FMT, FUC, GOL, NAG	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	A new class of highly potent, broadly neutralizing antibodies isolated from viremic patients infected with dengue virus., Dejnirattisai W, Wongwiwat W, Supasa S, Zhang X, Dai X, Rouvinsky A, Jumnainsong A, Edwards C, Quyen NT, Duangchinda T, Grimes JM, Tsai WY, Lai CY, Wang WK, Malasit P, Farrar J, Simmons CP, Zhou ZH, Rey FA, Mongkolsapaya J, Screaton GR, Nat Immunol. 2015 Feb;16(2):170-7. doi: 10.1038/ni.3058. Epub 2014 Dec 15. PMID:25501631

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (379 Kb) [Save to disk] Biological Unit Coordinates (5lcv.pdb1.gz) 370 Kb LPC: Ligand-Protein Contacts for 5LCV CSU: Contacts of Structural Units for 5LCV Structure Factors (1185 Kb) Retrieve 5LCV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LCV from S2C, [Save to disk] Re-refined 5lcv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LCV in 3D

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Visual 3D analysis of 5LCV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lcv_H] [5lcv_L] [5lcv_B] [5lcv_A] [5lcv] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5LCV: [IG_like] [IGv ] by SMART

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