5LG2 Metal Binding Protein date Jul 05, 2016
title Horse L Type Ferritin Iron Loaded For 60 Minutes
authors C.Pozzi, F.Di Pisa, S.Mangani
compound source
Molecule: Ferritin Light Chain
Chain: A
Synonym: Ferritin L Subunit
Engineered: Yes
 Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
Gene: Ftl
Expression_system: Equus Caballus
Expression_system_taxid: 9796
symmetry Space Group: F 4 3 2
R_factor 0.165 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.350 181.350 181.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand CD, CL, CME, FE, GOL, OXY, PER enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChemistry at the protein-mineral interface in L-ferritin assists the assembly of a functional (mu3-oxo)Tris[(mu2-peroxo)] triiron(III) cluster., Pozzi C, Ciambellotti S, Bernacchioni C, Di Pisa F, Mangani S, Turano P, Proc Natl Acad Sci U S A. 2017 Feb 15. pii: 201614302. doi:, 10.1073/pnas.1614302114. PMID:28202724
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (5lg2.pdb1.gz) 729 Kb
  • LPC: Ligand-Protein Contacts for 5LG2
  • CSU: Contacts of Structural Units for 5LG2
  • Structure Factors (272 Kb)
  • Retrieve 5LG2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LG2 from S2C, [Save to disk]
  • Re-refined 5lg2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LG2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LG2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lg2_A] [5lg2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LG2
  • Community annotation for 5LG2 at PDBWiki (http://pdbwiki.org)

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