5LHB Hydrolase date Jul 10, 2016
title Polyadpribosyl Glycosidase In Complex With Pdd00017262
authors J.Tucker, E.Barkauskaite
compound source
Molecule: Poly(Adp-Ribose) Glycohydrolase
Chain: A
Ec: 3.2.1.143
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parg
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_variant: Gold
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.010 89.730 95.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.23 Å
ligand 6WJ, 6WK, DMS, SO4 enzyme Hydrolase E.C.3.2.1.143 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFirst-in-Class Chemical Probes against Poly(ADP-ribose) Glycohydrolase (PARG) Inhibit DNA Repair with Differential Pharmacology to Olaparib., James DI, Smith KM, Jordan AM, Fairweather EE, Griffiths LA, Hamilton NS, Hitchin JR, Hutton CP, Jones S, Kelly P, McGonagle AE, Small H, Stowell AI, Tucker J, Waddell ID, Waszkowycz B, Ogilvie DJ, ACS Chem Biol. 2016 Oct 12. PMID:27689388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (5lhb.pdb1.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 5LHB
  • CSU: Contacts of Structural Units for 5LHB
  • Structure Factors (789 Kb)
  • Retrieve 5LHB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LHB from S2C, [Save to disk]
  • Re-refined 5lhb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LHB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LHB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lhb] [5lhb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LHB
  • Community annotation for 5LHB at PDBWiki (http://pdbwiki.org)

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