5LI8 Oxidoreductase date Jul 14, 2016
title Crystal Structure Of Mycobacterium Tuberculosis Cyp126a1 In With Ketoconazole
authors C.Levy, A.W.Munro, D.Leys
compound source
Molecule: Putative Cytochrome P450 126
Chain: A
Ec: 1.14.-.-
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis (Strain Cdc Oshkosh);
Organism_taxid: 83331
Gene: Cyp126, Mt0802
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.155 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.230 59.660 69.840 90.00 93.21 90.00
method X-Ray Diffractionresolution 1.83 Å
ligand HEM, KKK enzyme Oxidoreductase E.C.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Characterization and Ligand/Inhibitor Identification Provide Functional Insights into the Mycobacterium tuberculosis Cytochrome P450 CYP126A1., Chenge JT, Duyet LV, Swami S, McLean KJ, Kavanagh ME, Coyne AG, Rigby SE, Cheesman MR, Girvan HM, Levy CW, Rupp B, von Kries JP, Abell C, Leys D, Munro AW, J Biol Chem. 2017 Jan 27;292(4):1310-1329. doi: 10.1074/jbc.M116.748822. Epub, 2016 Dec 8. PMID:27932461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (5li8.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 5LI8
  • CSU: Contacts of Structural Units for 5LI8
  • Structure Factors (2617 Kb)
  • Retrieve 5LI8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LI8 from S2C, [Save to disk]
  • Re-refined 5li8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LI8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LI8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5li8_A] [5li8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LI8
  • Community annotation for 5LI8 at PDBWiki (http://pdbwiki.org)

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