5LIA	Hydrolase	date	Jul 14, 2016
title	Crystal Structure Of Murine Autotaxin In Complex With A Smal Inhibitor
authors	A.P.Turnbull, P.Shah, A.Cheasty, T.Raynham, L.Pang, P.Owen
compound		source
Molecule: Ectonucleotide Pyrophosphatasephosphodiesterase Member 2; Chain: A Synonym: E-Npp 2,Autotaxin,Extracellular Lysophospholipase Ec: 3.1.4.39 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Enpp2, Npps2, Pdnp2 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnt1- Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1	R_factor 0.160 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.160 61.580 66.140 85.77 72.68 80.21
method	X-Ray Diffraction	resolution	1.92 Å
ligand	6XN, BMA, CA, EDO, K, MAN, NA, NAG, SO4, ZN	enzyme	Hydrolase E.C.3.1.4.39 BRENDA
Gene Ontology	Chain Function Process Component A phosphodiesterase I activity... scavenger receptor activity
Primary reference	Discovery of potent inhibitors of the lysophospholipase autotaxin., Shah P, Cheasty A, Foxton C, Raynham T, Farooq M, Gutierrez IF, Lejeune A, Pritchard M, Turnbull A, Pang L, Owen P, Boyd S, Stowell A, Jordan A, Hamilton NM, Hitchin JR, Stockley M, MacDonald E, Quesada MJ, Trivier E, Skeete J, Ovaa H, Moolenaar WH, Ryder H, Bioorg Med Chem Lett. 2016 Oct 14. pii: S0960-894X(16)31064-2. doi:, 10.1016/j.bmcl.2016.10.036. PMID:27780639

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk] Biological Unit Coordinates (5lia.pdb1.gz) 271 Kb LPC: Ligand-Protein Contacts for 5LIA CSU: Contacts of Structural Units for 5LIA Structure Factors (4495 Kb) Retrieve 5LIA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LIA from S2C, [Save to disk] Re-refined 5lia structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LIA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LIA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lia] [5lia_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5LIA: [Endonuclease_NS] [NUC] [SO ] by SMART

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