5LP1	Hydrolase Hydrolase Inhibitor	date	Aug 11, 2016
title	Crystal Structure Of Human Lipoprotein-Associated Phospholip Complex With A [1.1.1]Bicyclopentane-Containing Inhibitor A Resolution.
authors	D.Somers
compound		source
Molecule: Platelet-Activating Factor Acetylhydrolase Chain: A Fragment: Unp Residues 46-427 Synonym: Paf Acetylhydrolase,1-Alkyl-2-Acetylglycerophospho Esterase,2-Acetyl-1-Alkylglycerophosphocholine Esterase,Gro Phospholipase A2,Gviia-Pla2,Ldl-Associated Phospholipase A2 Pla(2),Paf 2-Acylhydrolase; Ec: 3.1.1.47 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pla2g7, Pafah Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: C 1 2 1	R_factor 0.162 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 100.280 91.560 51.650 90.00 111.88 90.00
method	X-Ray Diffraction	resolution	1.91 Å
ligand	71H, CL	enzyme	Hydrolase E.C.3.1.1.47 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Investigation of a Bicyclo[1.1.1]pentane as a Phenyl Replacement within an LpPLA2 Inhibitor., Measom ND, Down KD, Hirst DJ, Jamieson C, Manas ES, Patel VK, Somers DO, ACS Med Chem Lett. 2016 Nov 15;8(1):43-48. doi: 10.1021/acsmedchemlett.6b00281., eCollection 2017 Jan 12. PMID:28105273

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (5lp1.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 5LP1 CSU: Contacts of Structural Units for 5LP1 Structure Factors (996 Kb) Retrieve 5LP1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LP1 from S2C, [Save to disk] Re-refined 5lp1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LP1 in 3D

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Visual 3D analysis of 5LP1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lp1_A] [5lp1] SWISS-PROT database: Domain organization of by SWISSPFAM

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