5LSO	Splicing Inhibitor	date	Sep 05, 2016
title	Crystal Structure Of Spf45 Uhm Domain With Cyclic Peptide In
authors	P.K.A.Jagtap, D.Garg, M.Sattler
compound		source
Molecule: Splicing Factor 45 Chain: A, B Fragment: Uhm Domain, Unp Residues 301-400 Synonym: 45 Kda-Splicing Factor,Rna-Binding Motif Protein 1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rbm17, Spf45 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Lys-Ser-Arg-Trp-Asp-Glu Chain: C, D Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 1 21 1	R_factor 0.181 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.600 73.590 45.010 90.00 97.90 90.00
method	X-Ray Diffraction	resolution	2.22 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Rational design of cyclic peptide inhibitors of U2AF homology motif (UHM) domains to modulate pre-mRNA splicing., Jagtap PK, Garg D, Kapp TG, Will CL, Demmer O, Luhrmann R, Kessler H, Sattler M, J Med Chem. 2016 Oct 18. PMID:27753493

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (5lso.pdb1.gz) 19 Kb Biological Unit Coordinates (5lso.pdb2.gz) 19 Kb CSU: Contacts of Structural Units for 5LSO Structure Factors (102 Kb) Retrieve 5LSO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LSO from S2C, [Save to disk] Re-refined 5lso structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LSO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LSO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lso_C] [5lso] [5lso_D] [5lso_A] [5lso_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5LSO

Community annotation for 5LSO at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---