5LUB	Hydrolase	date	Sep 08, 2016
title	Crystal Structure Of Human Legumain (Aep) In Complex With Co
authors	E.Dall, K.Ye, H.Brandstetter
compound		source
Molecule: Legumain Chain: B, A Fragment: Unp Residues 26-287 Synonym: Asparaginyl Endopeptidase,Protease,Cysteine 1 Ec: 3.4.22.34 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lgmn, Prsc1 Expression_system: Leishmania Tarentolae Expression_system_taxid: 5689
symmetry	Space Group: P 21 21 21	R_factor 0.221 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.520 75.040 172.970 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	3Y7, NAG, SNN	enzyme	Hydrolase E.C.3.4.22.34 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Inhibition of delta-secretase improves cognitive functions in mouse models of Alzheimer's disease., Zhang Z, Obianyo O, Dall E, Du Y, Fu H, Liu X, Kang SS, Song M, Yu SP, Cabrele C, Schubert M, Li X, Wang JZ, Brandstetter H, Ye K, Nat Commun. 2017 Mar 27;8:14740. doi: 10.1038/ncomms14740. PMID:28345579

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk] Biological Unit Coordinates (5lub.pdb1.gz) 47 Kb Biological Unit Coordinates (5lub.pdb2.gz) 45 Kb LPC: Ligand-Protein Contacts for 5LUB CSU: Contacts of Structural Units for 5LUB Structure Factors (2164 Kb) Retrieve 5LUB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LUB from S2C, [Save to disk] Re-refined 5lub structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LUB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LUB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lub_A] [5lub_B] [5lub] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5LUB at PDBWiki (http://pdbwiki.org)

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