5LUE Toxin date Sep 08, 2016
title Minor Form Of The Recombinant Cytotoxin-1 From N. Oxiana
authors P.V.Dubovskii, M.A.Dubinnyi, M.A.Shulepko, E.N.Lyukmanova, D.A.D M.P.Kirpichnikov, R.G.Efremov
compound source
Molecule: Vc-1=Cytotoxin
Chain: A
Synonym: Cytotoxin-1
Engineered: Yes
 Organism_scientific: Naja Oxiana
Organism_common: Central Asian Cobra
Organism_taxid: 8657
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Pet-22b(+)
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Dynamic "Portraits" of Recombinant and Native Cytotoxin I from Naja oxiana: How Close Are They?, Dubovskii PV, Dubinnyi MA, Konshina AG, Kazakova ED, Sorokoumova GM, Ilyasova TM, Shulepko MA, Chertkova RV, Lyukmanova EN, Dolgikh DA, Arseniev AS, Efremov RG, Biochemistry. 2017 Aug 29;56(34):4468-4477. doi: 10.1021/acs.biochem.7b00453., Epub 2017 Aug 14. PMID:28749688
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk]
  • Biological Unit Coordinates (5lue.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 5LUE
  • Original NMR restraints for 5LUE from PDB
  • Retrieve 5LUE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LUE from S2C, [Save to disk]
    • View 5LUE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LUE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lue_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LUE
  • Community annotation for 5LUE at PDBWiki (http://pdbwiki.org)

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