5LVV	Transferase	date	Sep 14, 2016
title	Human Ogt In Complex With Udp And Fused Substrate Peptide (T
authors	O.Raimi
compound		source
Molecule: Udp-N-Acetylglucosamine--Peptide N- Acetylglucosaminyltransferase 110 Kda Subunit,Udp-N- Acetylglucosamine--Peptide N-Acetylglucosaminyltransferase Subunit; Chain: A Synonym: O-Glcnac Transferase Subunit P110,O-Linked N- Acetylglucosamine Transferase 110 Kda Subunit,Ogt,O-Glcnac Transferase Subunit P110,O-Linked N-Acetylglucosamine Trans Kda Subunit,Ogt; Ec: 2.4.1.255,2.4.1.255 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ogt Expression_system: Escherichia Coli K-12 Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Plysis Expression_system_vector_type: Plasmid
symmetry	Space Group: P 61 2 2	R_factor 0.193 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.533 98.533 367.200 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.54 Å
ligand	NAG, UDP	enzyme	Transferase E.C.2.4.1.255 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Recognition of a glycosylation substrate by the O-GlcNAc transferase TPR repeats., Rafie K, Raimi O, Ferenbach AT, Borodkin VS, Kapuria V, van Aalten DMF, Open Biol. 2017 Jun;7(6). pii: 170078. doi: 10.1098/rsob.170078. PMID:28659383

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk] Biological Unit Coordinates (5lvv.pdb1.gz) 116 Kb LPC: Ligand-Protein Contacts for 5LVV CSU: Contacts of Structural Units for 5LVV Structure Factors (765 Kb) Retrieve 5LVV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LVV from S2C, [Save to disk] Re-refined 5lvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LVV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LVV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lvv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5LVV

Community annotation for 5LVV at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---