5M1L Dna date Oct 09, 2016
title Structure Of Dna Agcga-Quadruplex Adopted By 15-Mer D(Gcgagggagcgaggg), Vk34, Oligonucleotide Found In Regulato Of The Plekhg3 Human Gene
authors V.Kocman, J.Plavec
compound source
Molecule: Dna (5'-D(Gpcpgpapgpgpgpapgpcpgpapgp 3');
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
Primary referenceTetrahelical structural family adopted by AGCGA-rich regulatory DNA regions., Kocman V, Plavec J, Nat Commun. 2017 May 17;8:15355. doi: 10.1038/ncomms15355. PMID:28513602
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (5m1l.pdb1.gz) 17 Kb
  • CSU: Contacts of Structural Units for 5M1L
  • Original NMR restraints for 5M1L from PDB
  • Retrieve 5M1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M1L from S2C, [Save to disk]
    • View 5M1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M1L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m1l_A] [5m1l_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M1L
  • Community annotation for 5M1L at PDBWiki (http://pdbwiki.org)

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