5M4I Transferase date Oct 18, 2016
title Complex Structure Of Human Protein Kinase Ck2 Catalytic Subu The Inhibitor 4'-Carboxy-6,8-Chloro-Flavonol (Flc21) Crysta Under High-Salt Conditions
authors K.Niefind, N.Bischoff, S.M.Yarmoluk, V.G.Bdzhola, A.G.Golub, A.O. A.O.Prykhod'Ko
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.188 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.591 72.591 133.252 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.22 Å
ligand 7FC, CL enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Hypervariability of the Two Human Protein Kinase CK2 Catalytic Subunit Paralogs Revealed by Complex Structures with a Flavonol- and a Thieno[2,3-d]pyrimidine-Based Inhibitor., Niefind K, Bischoff N, Golub AG, Bdzhola VG, Balanda AO, Prykhod'ko AO, Yarmoluk SM, Pharmaceuticals (Basel). 2017 Jan 11;10(1). pii: E9. doi: 10.3390/ph10010009. PMID:28085026
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (5m4i.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 5M4I
  • CSU: Contacts of Structural Units for 5M4I
  • Structure Factors (219 Kb)
  • Retrieve 5M4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M4I from S2C, [Save to disk]
  • Re-refined 5m4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M4I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m4i_A] [5m4i]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M4I
  • Community annotation for 5M4I at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science