5M5U	Endocytosis	date	Oct 22, 2016
title	Clathrin Heavy Chain N-Terminal Domain Bound To A Clathrin-B From Hepatitis D Virus Large Antigen (Clade 1)
authors	J.Muenzner, S.C.Graham
compound		source
Molecule: Clathrin Heavy Chain 1 Chain: A, B Engineered: Yes Other_details: N-Terminal Residues 'Gs' Are Residual Follow Cleavage Of The Purification Tag;		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Gene: Cltc Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Popt3g
Molecule: Large Delta Antigen Chain: E, F, G, H Fragment: Clathrin-Box Motif, Unp Residues 197-203 Synonym: L-Hdag,P27 Engineered: Yes Other_details: N- And C-Terminal Serine Residues Are Non-Na Were Added To Enhance Solubility		Synthetic: Yes Organism_scientific: Hepatitis Delta Virus (Isolate Italian Organism_common: Hdv Organism_taxid: 10423
symmetry	Space Group: C 1 2 1	R_factor 0.175 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.230 131.190 77.870 90.00 115.61 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk] Biological Unit Coordinates (5m5u.pdb1.gz) 122 Kb Biological Unit Coordinates (5m5u.pdb2.gz) 122 Kb LPC: Ligand-Protein Contacts for 5M5U CSU: Contacts of Structural Units for 5M5U Structure Factors (1498 Kb) Retrieve 5M5U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5M5U from S2C, [Save to disk] Re-refined 5m5u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5M5U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5M5U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5m5u_E] [5m5u] [5m5u_A] [5m5u_B] [5m5u_G] [5m5u_F] [5m5u_H] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5M5U

Community annotation for 5M5U at PDBWiki (http://pdbwiki.org)

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