5M8Y Oxidoreductase date Oct 30, 2016
title Pce Reductive Dehalogenase From S. Multivorans In Complex Wi Chlorophenol
authors C.Kunze, M.Bommer, W.R.Hagen, M.Uksa, H.Dobbek, T.Schubert, G.Diek
compound source
Molecule: Tetrachloroethene Reductive Dehalogenase Catalyti Pcea;
Chain: A, B
 Organism_scientific: Sulfurospirillum Multivorans Dsm 12446
Organism_taxid: 1150621
symmetry Space Group: P 41
R_factor 0.130 R_Free 0.160
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.783 73.783 185.233 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand 3CH, BVQ, GOL, SF4 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (5m8y.pdb1.gz) 300 Kb
  • LPC: Ligand-Protein Contacts for 5M8Y
  • CSU: Contacts of Structural Units for 5M8Y
  • Structure Factors (1307 Kb)
  • Retrieve 5M8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5M8Y from S2C, [Save to disk]
  • Re-refined 5m8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5M8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5M8Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5m8y_A] [5m8y_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5M8Y
  • Community annotation for 5M8Y at PDBWiki (http://pdbwiki.org)

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