5MDX Photosynthesis date Nov 13, 2016
title Cryo-Em Structure Of The Psii Supercomplex From Arabidopsis
authors L.S.Van Bezouwen, S.Caffarri, R.S.Kale, R.Kouril, A.M.W.H.Thunni G.T.Oostergetel, E.J.Boekema
compound source
Molecule: Photosystem II Protein D1
Chain: A, a
Synonym: Psii D1 Protein,Photosystem II Q(B) Protein
Ec: 1.10.3.9
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Cp47 Reaction Center Protein
Chain: B, b
Synonym: Psii 47 Kda Protein,Protein Cp-47
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Cp43 Reaction Center Protein
Chain: C, c
Synonym: Psii 43 Kda Protein,Protein Cp-43
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II D2 Protein
Chain: D, d
Synonym: Psii D2 Protein,Photosystem Q(A) Protein
Ec: 1.10.3.9
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Cytochrome B559 Subunit Alpha
Chain: E, e
Synonym: Psii Reaction Center Subunit V
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Cytochrome B559 Subunit Beta (Psbf)
Chain: F, f
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein H
Chain: H, h
Synonym: Psii-H,Photosystem II 10 Kda Phosphoprotein
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein I
Chain: I, I
Synonym: Psii-I,Psii 4.8 Kda Protein
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein K
Chain: K, k
Synonym: Psii-K
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein L
Chain: L, l
Synonym: Psii-L
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein M
Chain: M, m
Synonym: Psii-M
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Oxygen-Evolving Enhancer Protein 1-1, Chloroplast
Chain: O, o
Synonym: Oee1,33 Kda Subunit Of Oxygen Evolving System Of P II,33 Kda Thylakoid Membrane Protein,Manganese-Stabilizing Msp-1,Oec 33 Kda Subunit;
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein T
Chain: T, t
Synonym: Psii-T
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center W Protein, Chlorop
Chain: W, w
Synonym: Psii 6.1 Kda Protein
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein X
Chain: X, x
Synonym: Psbx,Photosystem II Subunit X,Putative Psii-X Prot Putative Uncharacterized Protein At2g06520; T12h3.7;
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Photosystem II Reaction Center Protein Z
Chain: Z, z
Synonym: Psii-Z
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Chlorophyll A-B Binding Protein Cp29.1, Chloropla
Chain: R, r
Synonym: Lhcb4.1,Lhcii Protein 4.1
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Chlorophyll A-B Binding Protein Cp26, Chloroplast
Chain: S, s
Synonym: Lhcb5,Lhciic,Light-Harvesting Complex II Protein 5
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Chlorophyll A-B Binding Protein 1, Chloroplastic
Chain: G, N, Y, g, n, y, 1, 2, 3, 5, 6, 7
Synonym: Chlorophyll A-B Protein 140,Cab-140,Lhcii Type I C
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: 4, 8
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.30 Å
ligand CHL, CLA, FE2, HEM, PHO enzyme Oxidoreductase E.C.1.10.3.9 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B, b


E, e


F, f


H, h


I, i


K, k


L, l


M, m


O, o


S, N, 7, Y, 2, y, 1, g, s, G, r, 6, n, 3, 8, 4, R, 5


T, t


W, w


Z, z


a, A


c, C


d, D


x, X


Primary referenceSubunit and chlorophyll organization of the plant photosystem II supercomplex., van Bezouwen LS, Caffarri S, Kale RS, Kouril R, Thunnissen AWH, Oostergetel GT, Boekema EJ, Nat Plants. 2017 Jun 12;3:17080. doi: 10.1038/nplants.2017.80. PMID:28604725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1551 Kb) [Save to disk]
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