5MKW Hydrolase date Dec 05, 2016
title Crystal Structure Of The Human Zranb3 Hnh Domain
authors A.Ariza
compound source
Molecule: Dna Annealing Helicase And Endonuclease Zranb3
Chain: A, B
Synonym: Annealing Helicase 2,Ah2,Zinc Finger Ran-Binding D Containing Protein 3;
Ec: 3.6.4.-,3.1.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zranb3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.192 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.841 67.552 92.161 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand GOL, ZN enzyme Hydrolase E.C.3.6.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the function of ZRANB3 in replication stress response., Sebesta M, Cooper CDO, Ariza A, Carnie CJ, Ahel D, Nat Commun. 2017 Jun 16;8:15847. doi: 10.1038/ncomms15847. PMID:28621305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (5mkw.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (5mkw.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 5MKW
  • CSU: Contacts of Structural Units for 5MKW
  • Structure Factors (961 Kb)
  • Retrieve 5MKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MKW from S2C, [Save to disk]
  • Re-refined 5mkw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5MKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MKW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mkw_A] [5mkw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MKW
  • Community annotation for 5MKW at PDBWiki (http://pdbwiki.org)

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