5MMK Antimicrobial Protein date Dec 10, 2016
title Hyl-20
authors R.Hexnerova
compound source
Molecule: Gly-Ile-Leu-Ser-Ser-Leu-Trp-Lys-Lys-Leu-Lys-Lys-I Ala-Lys;
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Hylaeus Signatus
Organism_taxid: 1126410
methodSolution NMR
ligand NH2 enzyme
Primary referenceHow proteases from Enterococcus faecalis contribute to its resistance to short alpha-helical antimicrobial peptides., Nesuta O, Budesinsky M, Hadravova R, Monincova L, Humpolickova J, Cerovsky V, Pathog Dis. 2017 Sep 29;75(7). doi: 10.1093/femspd/ftx091. PMID:28830077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5mmk.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 5MMK
  • CSU: Contacts of Structural Units for 5MMK
  • Original NMR restraints for 5MMK from PDB
  • Retrieve 5MMK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MMK from S2C, [Save to disk]
    • View 5MMK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MMK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mmk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MMK
  • Community annotation for 5MMK at PDBWiki (http://pdbwiki.org)

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