5MRH Signaling Protein date Dec 23, 2016
title Crystal Structure Of The Vps10p Domain Of Human Sortilinnts Complex With Triazolone 1
authors J.L.Andersen, D.Strandbygaard, S.Thirup
compound source
Molecule: Sortilin
Chain: A
Synonym: 100 Kda Nt Receptor,Glycoprotein 95,Gp95,Neurotens Receptor 3,Ntr3;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sort1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: C 1 2 1
R_factor 0.211 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.395 78.230 111.796 90.00 127.20 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand NAG, PGE, Q9Z enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe identification of novel acid isostere based inhibitors of the VPS10P family sorting receptor Sortilin., Andersen JL, Lindberg S, Langgard M, Maltas PJ, Ronn LCB, Bundgaard C, Strandbygaard D, Thirup S, Watson SP, Bioorg Med Chem Lett. 2017 Jun 1;27(11):2629-2633. doi:, 10.1016/j.bmcl.2017.02.028. Epub 2017 Feb 20. PMID:28462834
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (222 Kb) [Save to disk]
  • Biological Unit Coordinates (5mrh.pdb1.gz) 216 Kb
  • LPC: Ligand-Protein Contacts for 5MRH
  • CSU: Contacts of Structural Units for 5MRH
  • Structure Factors (799 Kb)
  • Retrieve 5MRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MRH from S2C, [Save to disk]
  • Re-refined 5mrh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5MRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MRH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mrh_A] [5mrh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MRH
  • Community annotation for 5MRH at PDBWiki (http://pdbwiki.org)

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