5MTS Cell Adhesion date Jan 10, 2017
title Complex Of Fimh Lectin With A Tazman (Thiazolylaminomannosid Member Known As Potent Anti-Adhesive Agent At 2.6 A Resolut
authors J.De Ruyck, J.Bouckaert
compound source
Molecule: Protein Fimh
Chain: A, B
Engineered: Yes
 Organism_scientific: Escherichia Coli K-12
Organism_taxid: 83333
Gene: Fimh, B4320, Jw4283
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.170 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.277 90.277 97.765 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand NI, XKA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePhysiochemical tuning of potent E. coli antiadhesives by microencapsulation and methylene homologation., Alvarez Dorta D, Chalopin T, Sivignon A, De Ruyck J, Dumych T, Bilyy R, Deniaud D, Barnich N, Bouckaert J, Gouin SG, ChemMedChem. 2017 Mar 3. doi: 10.1002/cmdc.201700061. PMID:28257558
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (5mts.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5mts.pdb2.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 5MTS
  • CSU: Contacts of Structural Units for 5MTS
  • Structure Factors (295 Kb)
  • Retrieve 5MTS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MTS from S2C, [Save to disk]
  • Re-refined 5mts structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5MTS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MTS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mts_B] [5mts_A] [5mts]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MTS
  • Community annotation for 5MTS at PDBWiki (http://pdbwiki.org)

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