5N0D Lyase date Feb 02, 2017
title Crystal Structure Of Human Carbonic Anhydrase II In Complex 4-(6,7-Dihydroxy-1-Phenyl-3,4-Tetrahydroisoquinoline-1h-2-C Benzenesulfonamide.
authors A.Di Fiore, G.De Simone
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.173 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.300 41.330 71.810 90.00 104.29 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 8F2, GOL, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing Molecular Interactions between Human Carbonic Anhydrases (hCAs) and a Novel Class of Benzenesulfonamides., Bruno E, Buemi MR, Di Fiore A, De Luca L, Ferro S, Angeli A, Cirilli R, Sadutto D, Alterio V, Monti SM, Supuran CT, De Simone G, Gitto R, J Med Chem. 2017 May 9. doi: 10.1021/acs.jmedchem.7b00264. PMID:28453941
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (5n0d.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5N0D
  • CSU: Contacts of Structural Units for 5N0D
  • Structure Factors (373 Kb)
  • Retrieve 5N0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N0D from S2C, [Save to disk]
  • Re-refined 5n0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5N0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5N0D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n0d] [5n0d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5N0D
  • Community annotation for 5N0D at PDBWiki (http://pdbwiki.org)

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