5NY8 Rna date May 11, 2017
title The Structure Of The Thermobifida Fusca Guanidine III Ribosw Aminoguanidine
authors L.Huang, J.Wang, D.M.J.Lilley
compound source
Molecule: Rna (41-Mer)
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Thermobifida Fusca
Organism_taxid: 2021
symmetry Space Group: P 31 2 1
R_factor 0.189 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.390 83.390 66.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.04 Å
ligand AGU, CBV, MG, NA enzyme
Primary referenceStructure of the Guanidine III Riboswitch., Huang L, Wang J, Wilson TJ, Lilley DMJ, Cell Chem Biol. 2017 Sep 28. pii: S2451-9456(17)30319-7. doi:, 10.1016/j.chembiol.2017.08.021. PMID:28988949
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (5ny8.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (5ny8.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5NY8
  • CSU: Contacts of Structural Units for 5NY8
  • Structure Factors (707 Kb)
  • Retrieve 5NY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NY8 from S2C, [Save to disk]
    • View 5NY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NY8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ny8_A] [5ny8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NY8
  • Community annotation for 5NY8 at PDBWiki (http://pdbwiki.org)

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