5NZY Dna Binding Protein date May 15, 2017
title Crystal Structure Of Dna Cross-Link Repair Protein 1a In Com Cefotaxime
authors J.A.Newman, H.Aitkenhead, K.Kupinska, N.A.Burgess-Brown, R.Talon T.Krojer, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.G
compound source
Molecule: Dna Cross-Link Repair 1a Protein
Chain: A
Synonym: Snm1 Homolog A,Hsnm1a
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dclre1a, Kiaa0086, Snm1, Snm1a
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.122 55.830 112.743 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CE3, NI enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (5nzy.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5NZY
  • CSU: Contacts of Structural Units for 5NZY
  • Structure Factors (1899 Kb)
  • Retrieve 5NZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NZY from S2C, [Save to disk]
  • Re-refined 5nzy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5NZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NZY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nzy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NZY
  • Community annotation for 5NZY at PDBWiki (http://pdbwiki.org)

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