5O33 Hydrolase date May 23, 2017
title A Structure Of The Gef Kalirin Dh1 Domain In Complex With Th Gtpase Rac1
authors J.Gray, T.Krojer, R.Talon, M.Fairhead, C.Bountra, C.H.Arrowsmith, A.Edwards, P.Brennan, F.Von Delft
compound source
Molecule: Ras-Related C3 Botulinum Toxin Substrate 1
Chain: A
Synonym: Cell Migration-Inducing Gene 5 Protein,Ras-Like Pr Tc25,P21-Rac1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rac1, Tc25, Mig5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Kalirin
Chain: B
Fragment: Unp Residues 1253-1432
Synonym: Huntingtin-Associated Protein-Interacting Protein, Terminal Interactor Protein 10,P-Cip10,Protein Duo,Serinet Protein Kinase With Dbl- And Pleckstrin Homology Domain;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Kalrn, Duo, Hapip
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.207 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.255 63.255 346.704 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.64 Å
ligand EDO, GDP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5o33.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 5O33
  • CSU: Contacts of Structural Units for 5O33
  • Structure Factors (453 Kb)
  • Retrieve 5O33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O33 from S2C, [Save to disk]
  • Re-refined 5o33 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5O33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O33
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o33_B] [5o33_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O33
  • Community annotation for 5O33 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science