5O5Z Transferase date Jun 02, 2017
title Crystal Structure Of Thermococcus Litoralis Adp-Dependent Gl (Gk)
authors A.Herrera-Morande, V.Castro-Fernandez, F.Merino, C.A.Ramirez-Sa F.J.Fernandez, V.Guixe, M.C.Vega
compound source
Molecule: Adp-Dependent Glucokinase,Adp-Dependent Glucokina Dependent Glucokinase;
Chain: A, B
Synonym: Adpgk,Adpgk,Adpgk
Ec: 2.7.1.147,2.7.1.147,2.7.1.147
Engineered: Yes
Organism_scientific: Thermococcus Litoralis
Organism_taxid: 2265
Gene: Glka, Occ_09701
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet17
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.282 97.835 113.534 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.44 Å
ligand AT4, GLC, GOL, SO4 enzyme Transferase E.C.2.7.1.147 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceProtein topology determines substrate-binding mechanism in homologous enzymes., Herrera-Morande A, Castro-Fernandez V, Merino F, Ramirez-Sarmiento CA, Fernandez FJ, Vega MC, Guixe V, Biochim Biophys Acta Gen Subj. 2018 Dec;1862(12):2869-2878. doi:, 10.1016/j.bbagen.2018.09.007. Epub 2018 Sep 12. PMID:30251675
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (5o5z.pdb1.gz) 153 Kb
  • Biological Unit Coordinates (5o5z.pdb2.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 5O5Z
  • CSU: Contacts of Structural Units for 5O5Z
  • Structure Factors (482 Kb)
  • Retrieve 5O5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O5Z from S2C, [Save to disk]
  • View 5O5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o5z_A] [5o5z_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O5Z
  • Community annotation for 5O5Z at PDBWiki (http://pdbwiki.org)

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