5OC0 Oxidoreductase date Jun 29, 2017
title Structure Of E. Coli Superoxide Oxidase
authors C.A.K.Lundgren, D.Sjostrand, O.Biner, M.Bennett, C.Von Ballmoos,
compound source
Molecule: Cytochrome B561
Chain: A
Synonym: Cytochrome B-561
Engineered: Yes
 Organism_scientific: Escherichia Coli K12
Organism_taxid: 83333
Gene: Cybb, B1418, Jw5224
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.188 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.046 91.102 97.923 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand 37X, GOL, HEM, MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceScavenging of superoxide by a membrane-bound superoxide oxidase., Lundgren CAK, Sjostrand D, Biner O, Bennett M, Rudling A, Johansson AL, Brzezinski P, Carlsson J, von Ballmoos C, Hogbom M, Nat Chem Biol. 2018 Jun 18. pii: 10.1038/s41589-018-0072-x. doi:, 10.1038/s41589-018-0072-x. PMID:29915379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5oc0.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 5OC0
  • CSU: Contacts of Structural Units for 5OC0
  • Structure Factors (137 Kb)
  • Retrieve 5OC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OC0 from S2C, [Save to disk]
    • View 5OC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OC0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oc0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OC0
  • Community annotation for 5OC0 at PDBWiki (http://pdbwiki.org)

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