5ODW Protein Transport date Jul 06, 2017
title Structure Of The Fpvai-Pyocin S2 Complex
authors P.White, A.Joshi, C.Kleanthous
compound source
Molecule: Ferripyoverdine Receptor
Chain: A, B
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 22644 Cip 104116 Jcm 14847 Lmg 12228 1c Prs 101
Organism_taxid: 208964
Atcc: 15692
Cell: Bacterial
Gene: Fpva, Pa2398
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Tne012
Expression_system_vector_type: Pbad-Myc-Hisb

Molecule: Pyocin-S2
Chain: C, D
Synonym: Killer Protein
Ec: 3.1.-.-
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 22644 Cip 104116 Jcm 14847 Lmg 12228 1c Prs 101
Organism_taxid: 208964
Atcc: 15692
Gene: Pys2, Pa1150
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet21a(+)
symmetry Space Group: I 2 2 2
R_factor 0.212 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
115.524 209.390 215.845 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand SO4 enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceExploitation of an iron transporter for bacterial protein antibiotic import., White P, Joshi A, Rassam P, Housden NG, Kaminska R, Goult JD, Redfield C, McCaughey LC, Walker D, Mohammed S, Kleanthous C, Proc Natl Acad Sci U S A. 2017 Oct 25. pii: 201713741. doi:, 10.1073/pnas.1713741114. PMID:29078392
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (610 Kb) [Save to disk]
  • Biological Unit Coordinates (5odw.pdb1.gz) 309 Kb
  • Biological Unit Coordinates (5odw.pdb2.gz) 299 Kb
  • LPC: Ligand-Protein Contacts for 5ODW
  • CSU: Contacts of Structural Units for 5ODW
  • Structure Factors (2395 Kb)
  • Retrieve 5ODW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ODW from S2C, [Save to disk]
  • View 5ODW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ODW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5odw_A] [5odw_B] [5odw_D] [5odw_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ODW
  • Community annotation for 5ODW at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science