5OES Plant Protein date Jul 10, 2017
title The Structure Of A Glutathione Synthetase (Stgss1) From Sola Tuberosum In Adp And Y-Ec Bound Closed Conformation.
authors C.J.Lilley, A.Maqbool, D.Wu, H.B.Yusup, L.M.Jones, P.R.J.Birch, M.J.Banfield, P.E.Urwin, S.Eves-Van Den Akker
compound source
Molecule: Glutathione Synthetase
Chain: A, B, C, D, E, F
Synonym: Gsh-S
Ec: 6.3.2.3
Engineered: Yes
 Organism_scientific: Solanum Tuberosum
Organism_common: Potato
Organism_taxid: 4113
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Shuffle
Expression_system_plasmid: Popins3c
symmetry Space Group: P 41 21 2
R_factor 0.224 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.390 154.390 344.325 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
ligand 3GC, ADP, MG enzyme Ligase E.C.6.3.2.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceEffector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene., Lilley CJ, Maqbool A, Wu D, Yusup HB, Jones LM, Birch PRJ, Banfield MJ, Urwin PE, Eves-van den Akker S, PLoS Genet. 2018 Apr 11;14(4):e1007310. doi: 10.1371/journal.pgen.1007310. PMID:29641602
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (919 Kb) [Save to disk]
  • Biological Unit Coordinates (5oes.pdb1.gz) 307 Kb
  • Biological Unit Coordinates (5oes.pdb2.gz) 307 Kb
  • Biological Unit Coordinates (5oes.pdb3.gz) 311 Kb
  • LPC: Ligand-Protein Contacts for 5OES
  • CSU: Contacts of Structural Units for 5OES
  • Structure Factors (6384 Kb)
  • Retrieve 5OES in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OES from S2C, [Save to disk]
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    • Visual 3D analysis of 5OES
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oes_C] [5oes_D] [5oes_B] [5oes_F] [5oes_A] [5oes_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OES
  • Community annotation for 5OES at PDBWiki (http://pdbwiki.org)

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