5OL2 Flavoprotein date Jul 26, 2017
title The Electron Transferring Flavoproteinbutyryl-Coa Dehydroge Complex From Clostridium Difficile
authors J.K.Demmer, N.P.Chowdhury, T.Selmer, U.Ermler, W.Buckel
compound source
Molecule: Electron Transfer Flavoprotein Large Subunit
Chain: A, D
Synonym: Electron Transfer Flavoprotein Subunit Alpha
Engineered: Yes
Organism_scientific: Clostridioides Difficile
Organism_taxid: 1496
Gene: Etfa, Etfa_4, Bn1095_140023, Bn1096_550022, Bn1097_53 Samea3374989_03962, Samea3375004_04103, Samea3375059_03747;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Electron Transfer Flavoprotein Small Subunit
Chain: B, E
Synonym: Electron Transfer Flavoprotein Subunit Beta,Electr Transfer Flavoproteins Subunit Beta;
Engineered: Yes

Organism_scientific: Clostridioides Difficile
Organism_taxid: 1496
Gene: Etfb, Etfb_3, Etfb_4, Bn1095_140022, Bn1096_550021, Bn1097_530020, Im33_05895, Samea3374973_01501, Samea3374989 Samea3375004_04104, Samea3375059_03748;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Acyl-Coa Dehydrogenase
Chain: C, F
Synonym: Acyl-Coa Dehydrogenase,Short-Chain Specific,Butyry Dehydrogenase;
Ec: 1.3.8.1,1.3.99.-
Engineered: Yes

Organism_scientific: Clostridioides Difficile
Organism_taxid: 1496
Gene: Acda, Bcd, Bn1095_140021, Bn1096_550020, Bn1097_53001 Im33_05890, Samea3374973_01502, Samea3374989_03964, Samea3375004_04105, Samea3375059_03749;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 2 2
R_factor 0.209 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
177.060 177.060 493.150 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand CA, COS, FAD enzyme Oxidoreductase E.C.1.3.8.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • electron transfer activity


  • E, B
  • electron transfer activity


  • F, C


    Primary referenceThe semiquinone swing in the bifurcating electron transferring flavoprotein/butyryl-CoA dehydrogenase complex from Clostridium difficile., Demmer JK, Pal Chowdhury N, Selmer T, Ermler U, Buckel W, Nat Commun. 2017 Nov 17;8(1):1577. doi: 10.1038/s41467-017-01746-3. PMID:29146947
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (649 Kb) [Save to disk]
  • Biological Unit Coordinates (5ol2.pdb1.gz) 320 Kb
  • Biological Unit Coordinates (5ol2.pdb2.gz) 323 Kb
  • LPC: Ligand-Protein Contacts for 5OL2
  • CSU: Contacts of Structural Units for 5OL2
  • Structure Factors (2105 Kb)
  • Retrieve 5OL2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OL2 from S2C, [Save to disk]
  • View 5OL2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OL2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j5ol2, region L:108-214 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ol2_B] [5ol2_C] [5ol2_D] [5ol2_E] [5ol2_F] [5ol2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OL2
  • Community annotation for 5OL2 at PDBWiki (http://pdbwiki.org)

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