5S4A Viral Protein date Nov 02, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Sar Nsp3 Macrodomain In Complex With Z955123498
authors D.Fearon, M.Schuller, V.L.Rangel, A.Douangamath, J.G.M.Rack, K.Zh A.Aimon, J.Brandao-Neto, A.Dias, L.Dunnet, T.J.Gorrie-Stone, A.J T.Krojer, R.Skyner, W.Thompson, I.Ahel, F.Von Delft
compound source
Molecule: Non-Structural Protein 3
Chain: A, B
Fragment: Macrodomain
Synonym: Nsp3,Pl2-Pro,Papain-Like Protease,Papain-Like Prot Pro;
Ec: 3.4.19.121, 3.4.22.-
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.164 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.232 88.232 38.777 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.08 Å
ligand 4AP, DMS enzyme Hydrolase E.C.3.4.19.121 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (5s4a.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (5s4a.pdb2.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5S4A
  • CSU: Contacts of Structural Units for 5S4A
  • Structure Factors (5341 Kb)
  • Retrieve 5S4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5S4A from S2C, [Save to disk]
  • View 5S4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5S4A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5s4a_B] [5s4a_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5S4A
  • Community annotation for 5S4A at PDBWiki (http://pdbwiki.org)

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