5SCL Transferase Transferase Inhibitor date Dec 01, 2021
title Structure Of Liver Pyruvate Kinase In Complex With Anthraqui Derivative 1
authors A.Lulla, A.Foller, A.Nain-Perez, M.Grotli, P.Brear, M.Hyvonen
compound source
Molecule: Pyruvate Kinase
Chain: A, B, C, D, E, F, G, H
Ec: 2.7.1.40
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pexp-Nhis
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
206.875 112.269 187.907 90.00 92.32 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand AZN, FBP, K, MG, OXL enzyme Transferase E.C.2.7.1.40 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (580 Kb) [Save to disk]
  • Biological Unit Coordinates (5scl.pdb1.gz) 282 Kb
  • Biological Unit Coordinates (5scl.pdb2.gz) 283 Kb
  • LPC: Ligand-Protein Contacts for 5SCL
  • CSU: Contacts of Structural Units for 5SCL
  • Structure Factors (7320 Kb)
  • Retrieve 5SCL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SCL from S2C, [Save to disk]
    • View 5SCL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5SCL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5scl_E] [5scl_C] [5scl_F] [5scl_D] [5scl_G] [5scl_A] [5scl_B] [5scl_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5SCL
  • Community annotation for 5SCL at PDBWiki (http://pdbwiki.org)

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