5T78 Immune System date Sep 02, 2016
title Crystal Structure Of Therapeutic Mab Ar20.5 In Complex With Peptide
authors C.L.Brooks, M.Movahedin
compound source
Molecule: Fab Fragment Ar20.5 - Light Chain
Chain: A, C
Fragment: Antibody Fab Fragment
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma

Molecule: Fab Fragment - Ar20.5 - Heavy Chain
Chain: B, D
Fragment: Muc1 Peptide Apdtrpap
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_taxid: 10090
Expression_system_cell_line: Hybridoma

Molecule: Muc1 Glycopeptide
Chain: F, E
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.194 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.250 100.460 235.320 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand NGA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (413 Kb) [Save to disk]
  • Biological Unit Coordinates (5t78.pdb1.gz) 203 Kb
  • Biological Unit Coordinates (5t78.pdb2.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 5T78
  • CSU: Contacts of Structural Units for 5T78
  • Structure Factors (1269 Kb)
  • Retrieve 5T78 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T78 from S2C, [Save to disk]
  • Re-refined 5t78 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T78 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T78
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t78_B] [5t78_E] [5t78_F] [5t78_C] [5t78_A] [5t78] [5t78_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T78
  • Community annotation for 5T78 at PDBWiki (http://pdbwiki.org)

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